file: ianmac
B&B cave Canada
initial samples in polybags
Organism: BB1
stain gram positive at least in young cultures:  +   MORPHOLOGY:  r   width:  1   length:  1.5   microscopic appearance:  chains   biome:  0  
Closest match:
(1) Agrobacterium tumefaciens Biovar 3
50.00% ( 2 / 4 )
(2) Agrobacterium tumefaciens Biovar 2
50.00% ( 2 / 4 )
(3) Agrobacterium tumefaciens Biovar 1
50.00% ( 2 / 4 )
Organism: BB2
stain gram positive at least in young cultures:  -   MORPHOLOGY:  c   diameter:  1.0   width:  1.0   length:  1.0   biome:  0  
Closest match:
(1) Clathrochloris sulfurica
100.00% ( 4 / 4 )
(2) Rhodopseudomonas capsulata
66.67% ( 2 / 3 )
(3) Prosthecochloris aestuarii
66.67% ( 2 / 3 )
Organism: ib pdylime yellow
Surface:  yellow shiny   stain gram positive at least in young cultures:  -   MORPHOLOGY:  r   width:  0.25   length:  0.5   biome:  0  
Closest match:
(1) Yersinia enterocolitica biovar 1
60.00% ( 3 / 5 )
(2) Agrobacterium tumefaciens Biovar 3
50.00% ( 2 / 4 )
(3) Agrobacterium tumefaciens Biovar 3
50.00% ( 2 / 4 )
Organism: ib pdylime yellow
Surface:  yellow shiny   stain gram positive at least in young cultures:  -   MORPHOLOGY:  r   width:  0.25   length:  0.5   biome:  0  
Closest match:
(1) Yersinia enterocolitica biovar 1
60.00% ( 3 / 5 )
(2) Agrobacterium tumefaciens Biovar 3
50.00% ( 2 / 4 )
(3) Agrobacterium tumefaciens Biovar 3
50.00% ( 2 / 4 )
Organism: ib pdylime pink
Surface:  pink shiny   stain gram positive at least in young cultures:  -   MORPHOLOGY:  r   biome:  0  
Closest match:
(1) Yersinia ruckeri
66.67% ( 2 / 3 )
(2) Yersinia pseudotuberculosis
66.67% ( 2 / 3 )
(3) Yersinia pestis
66.67% ( 2 / 3 )
Organism: ib pdylime fringe
Surface:  pink   stain gram positive at least in young cultures:  -   MORPHOLOGY:  b   width:  1   length:  2.5   biome:  0  
Closest match:
(1) Sporosarcina
25.00% ( 1 / 4 )
(2) Sporolactobacillus
25.00% ( 1 / 4 )
(3) Planococcus
25.00% ( 1 / 4 )
Organism: ib outerbag 2
Surface:  no growth   biome:  0  
Organism: ian swab2
stain gram positive at least in young cultures:  -   catalase:  -   MORPHOLOGY:  c   diameter:  1.425   width:  1.425   length:  1.425   biome:  0  
Closest match:
(1) Thiocapsa pfennigii
100.00% ( 4 / 4 )
(2) Lactobacillus
40.00% ( 2 / 5 )
(3) Bacillus
20.00% ( 1 / 5 )
Organism: group1 outer bag bacteria 1
Surface:  yellow lobes   biome:  0  
Organism: group1 outer bag bacteria 2
Surface:  yellow   biome:  0  
Organism: ib 1 edge
Surface:  cream dull   LUX:  2   biome:  11  
Organism: ib 2 pink
Surface:  pink   catalase:  +   LUX:  2   biome:  12  
Closest match:
(1) Yersinia ruckeri
50.00% ( 1 / 2 )
(2) Yersinia pseudotuberculosis
50.00% ( 1 / 2 )
(3) Yersinia pestis
50.00% ( 1 / 2 )
Organism: ib 2 white
Surface:  white   stain gram positive at least in young cultures:  -   catalase:  +   MORPHOLOGY:  r   width:  1   length:  3   LUX:  2   biome:  12  
Closest match:
(1) Yersinia ruckeri
50.00% ( 3 / 6 )
(2) Yersinia pseudotuberculosis
50.00% ( 3 / 6 )
(3) Yersinia pestis
50.00% ( 3 / 6 )
Organism: ib 2 yellow
Surface:  yellow shiny   stain gram positive at least in young cultures:  -   catalase:  +   MORPHOLOGY:  b   width:  2   length:  3   LUX:  2   biome:  12  
Closest match:
(1) Bacillus
40.00% ( 2 / 5 )
(2) Lactobacillus
20.00% ( 1 / 5 )
Organism: ian-2
stain gram positive at least in young cultures:  +   MORPHOLOGY:  r   width:  1.0   length:  5.0   microscopic appearance:  chains   LUX:  2   biome:  12  
Closest match:
(1) Agrobacterium tumefaciens Biovar 3
50.00% ( 2 / 4 )
(2) Agrobacterium tumefaciens Biovar 2
50.00% ( 2 / 4 )
(3) Agrobacterium tumefaciens Biovar 1
50.00% ( 2 / 4 )
Organism: ib 3
Surface:  no growth pdy   LUX:  2   biome:  13  
Organism: ib 3.1
Surface:  contaminant  
Organism: ian-x.1
Surface:  cream shiny   arginine:  -   TSI GAS:  -   pH in V-P broth<6:  -   utilization of citrate:  -   tsi:  -   TSI BUTT:  -   TSI H2S:  -   TSI SLANT:  -   urease:  -   sellers:  -   nitrate:  -   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   nitrite to N2:  -   LUX:  2   biome:  1x  
Closest match:
(1) Acinetobacter lwoffii
72.73% ( 8 / 11 )
(2) Pseudomonas aeruginosa
23.53% ( 4 / 17 )
(3) Arizona
16.67% ( 1 / 6 )
Organism: ib X
Surface:  several bacteria some lobed   LUX:  2   biome:  1x  
Organism: ian-wa
microscopic appearance:  amoeba   biome:  1wa  
Organism: ian-wb.1
Surface:  cream smooth   arginine:  -   pH in V-P broth<6:  -   utilization of citrate:  -   stain gram positive at least in young cultures:  -   catalase:  -   indole:  -   MORPHOLOGY:  r   urease:  -   voges proskauer:  -   sellers:  -   nitrate:  -   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   width:  1.0   length:  3.0   microscopic appearance:  chains silica chips   nitrite to N2:  -   LUX:  2   biome:  1wb  
Closest match:
(1) Acinetobacter lwoffii
66.67% ( 8 / 12 )
(2) Yersinia pestis
53.85% ( 7 / 13 )
(3) Yersinia pseudotuberculosis
46.15% ( 6 / 13 )
Organism: ian-wb.2
Surface:  dull rough   pH in V-P broth<6:  -   utilization of citrate:  -   catalase:  -   oxidase:  +   urease:  -   voges proskauer:  -   nitrate:  +   microscopic appearance:  difficult   nitrite to N2:  -   LUX:  2   biome:  1wb  
Closest match:
(1) Yersinia pseudotuberculosis
37.50% ( 3 / 8 )
(2) Yersinia pestis
37.50% ( 3 / 8 )
(3) Yersinia kristensenii
37.50% ( 3 / 8 )
Organism: ian-wb.3
Surface:  purple smooth   arginine:  -   TSI GAS:  -   pH in V-P broth<6:  -   utilization of citrate:  -   catalase:  +   oxidase:  +   tsi:  -   TSI BUTT:  -   TSI H2S:  -   TSI SLANT:  -   urease:  +   voges proskauer:  -   sellers:  +   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   microscopic appearance:  see bergy   LUX:  2   biome:  1wb  
Closest match:
(1) Pseudomonas aeruginosa
35.29% ( 6 / 17 )
(2) Agrobacterium rhizogenes Biovar 2
33.33% ( 2 / 6 )
(3) Agrobacterium tumefaciens Biovar 2
16.67% ( 1 / 6 )
Organism: ian-wb.4
stain gram positive at least in young cultures:  -   flagella:  +   MORPHOLOGY:  r   Motility:  +   width:  0   length:  1.5   microscopic appearance:  pointed   LUX:  2   biome:  1wb  
Closest match:
(1) Acinetobacter lwoffii
72.73% ( 8 / 11 )
(2) Acinetobacter anitratum
54.55% ( 6 / 11 )
(3) Kurthia
44.44% ( 4 / 9 )
Organism: ian-wb.4a
Surface:  spore   arginine:  -   TSI GAS:  -   pH in V-P broth<6:  -   utilization of citrate:  -   stain gram positive at least in young cultures:  -   catalase:  +   indole:  -   MORPHOLOGY:  r   oxidase:  +   tsi:  -   TSI BUTT:  -   TSI H2S:  -   TSI SLANT:  -   urease:  -   voges proskauer:  -   sellers:  +   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   width:  0   length:  3   LUX:  2   biome:  1wb  
Closest match:
(1) Pseudomonas aeruginosa
44.44% ( 8 / 18 )
(2) Yersinia enterocolitica biovar 1
40.00% ( 6 / 15 )
(3) Agrobacterium rhizogenes Biovar 2
36.36% ( 4 / 11 )
Organism: ian-wb.4b
Surface:  large   arginine:  -   TSI GAS:  -   pH in V-P broth<6:  -   utilization of citrate:  -   stain gram positive at least in young cultures:  -   catalase:  +   indole:  -   MORPHOLOGY:  c   oxidase:  +   tsi:  -   TSI BUTT:  -   TSI H2S:  -   TSI SLANT:  -   urease:  -   voges proskauer:  -   sellers:  +   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   diameter:  3.5   gluOxa:  -   width:  3.5   length:  3.5   LUX:  2   biome:  1wb  
Closest match:
(1) Acinetobacter lwoffii
72.73% ( 8 / 11 )
(2) Acinetobacter anitratum
54.55% ( 6 / 11 )
(3) Kurthia
44.44% ( 4 / 9 )
Organism: ian-wb.5a
Surface:  spore   arginine:  -   pH in V-P broth<6:  -   utilization of citrate:  -   stain gram positive at least in young cultures:  +   catalase:  +   indole:  -   MORPHOLOGY:  r   oxidase:  +   urease:  -   voges proskauer:  -   sellers:  +   nitrate:  -   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   width:  0   length:  3   nitrite to N2:  -   LUX:  2   biome:  1wb  
Closest match:
(1) Acinetobacter lwoffii
76.92% ( 10 / 13 )
(2) Acinetobacter anitratum
61.54% ( 8 / 13 )
(3) Yersinia pestis
50.00% ( 7 / 14 )
Organism: ian-wb.5b
Surface:  large   arginine:  -   pH in V-P broth<6:  -   utilization of citrate:  -   stain gram positive at least in young cultures:  +   catalase:  +   indole:  -   MORPHOLOGY:  c   oxidase:  +   urease:  -   voges proskauer:  -   sellers:  +   nitrate:  -   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   diameter:  3.5   gluOxa:  -   width:  3.5   length:  3.5   nitrite to N2:  -   LUX:  2   biome:  1wb  
Closest match:
(1) Acinetobacter lwoffii
76.92% ( 10 / 13 )
(2) Acinetobacter anitratum
61.54% ( 8 / 13 )
(3) Alcaligenes faecalis
60.00% ( 6 / 10 )
Organism: ian-wb.6
Surface:  mixed cream dull   arginine:  -   TSI GAS:  -   pH in V-P broth<6:  -   utilization of citrate:  -   stain gram positive at least in young cultures:  +   catalase:  k   indole:  -   MORPHOLOGY:  r   oxidase:  +   tsi:  -   TSI BUTT:  -   TSI H2S:  -   TSI SLANT:  -   urease:  -   voges proskauer:  -   sellers:  -   nitrate:  -   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   width:  0   length:  3.5   nitrite to N2:  -   LUX:  2   biome:  1wb  
Closest match:
(1) Pseudomonas aeruginosa
30.00% ( 6 / 20 )
(2) Yersinia enterocolitica
25.00% ( 4 / 16 )
(3) Yersinia enterocolitica biovar 2
25.00% ( 4 / 16 )
Organism: ib wb 1
Surface:  spreading   stain gram positive at least in young cultures:  -   catalase:  k   MORPHOLOGY:  r   width:  0.75   length:  1.5   LUX:  2   biome:  1wb  
Closest match:
(1) Yersinia ruckeri
50.00% ( 3 / 6 )
(2) Yersinia pseudotuberculosis
50.00% ( 3 / 6 )
(3) Yersinia pestis
50.00% ( 3 / 6 )
Organism: group2 outer bag fungus
Surface:  fungus spores black   biome:  0  
Organism: group2 outer bag bacteria 1
Surface:  yellow   biome:  0  
Organism: group2 outer bag bacteria 2
Surface:  yellow lobes   biome:  0  
Organism: ib 4 mixed organisms
Surface:  fungi and bacteria   LUX:  0   biome:  24  
Organism: ib 4
Surface:  nocardia   catalase:  k   microscopic appearance:  filaments branching   LUX:  0   biome:  24  
Closest match:
(1) Pseudomonas mallei
50.00% ( 1 / 2 )
Organism: ib 5
Surface:  contaminant   LUX:  0   biome:  25  
Organism: ib 6
Surface:  no growth pdy   LUX:  0   biome:  26  
Organism: ian-6a
stain gram positive at least in young cultures:  -   MORPHOLOGY:  r   width:  1.0   length:  5.0   LUX:  0   biome:  26  
Closest match:
(1) Agrobacterium tumefaciens Biovar 3
75.00% ( 3 / 4 )
(2) Agrobacterium tumefaciens Biovar 2
75.00% ( 3 / 4 )
(3) Agrobacterium tumefaciens Biovar 1
75.00% ( 3 / 4 )
Organism: ian-6b
stain gram positive at least in young cultures:  -   MORPHOLOGY:  c   LUX:  0   biome:  26  
Closest match:
(1) Veillonella arvula
100.00% ( 2 / 2 )
(2) Veillonella alcalescens
100.00% ( 2 / 2 )
(3) Staphylocuccus hyicus subsp. hyicus
100.00% ( 2 / 2 )
Organism: ian-6c
width:  3.0   length:  10.0   microscopic appearance:  arthrospores long chains rectangular   LUX:  0   biome:  26  
Closest match:
(1) Thiocystis gelatinosa
50.00% ( 1 / 2 )
Organism: ib w2
Surface:  Geotrichum   catalase:  +   microscopic appearance:  filaments   LUX:  0   biome:  w2  
Closest match:
(1) Bacillus
33.33% ( 1 / 3 )
Organism: ian-w2.1
Surface:  tiny cream   arginine:  -   TSI GAS:  -   pH in V-P broth<6:  -   utilization of citrate:  -   tsi:  -   TSI BUTT:  -   TSI H2S:  -   TSI SLANT:  -   urease:  -   sellers:  -   nitrate:  -   sellers slant:  -   sellers butt:  -   sellers band:  -   pyorubrin:  -   sellers nitrogen gas:  -   gluOxa:  -   nitrite to N2:  -   LUX:  0   biome:  w2  
Closest match:
(1) Acinetobacter lwoffii
72.73% ( 8 / 11 )
(2) Pseudomonas aeruginosa
23.53% ( 4 / 17 )
(3) Arizona
16.67% ( 1 / 6 )